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    LOC4339899 B3 domain-containing protein Os06g0112300-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339899, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4339899
    Gene description
    B3 domain-containing protein Os06g0112300-like
    Locus tag
    OSNPB_060112300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_19871
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    Genomic context

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    See LOC4339899 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (852244..854468)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (695823..698258)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic Neighboring gene bark storage protein A Neighboring gene 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 Neighboring gene binding partner of ACD11 1 Neighboring gene transfer RNA aspartic acid (anticodon GUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B3 domain-containing protein Os06g0112300
    Names
    LOC_Os06g02230
    P0029D06.25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420995.1 → NP_001407924.1  B3 domain-containing protein Os06g0112300

      Status: VALIDATED

      Source sequence(s)
      AK106920, AP014962
      UniProtKB/Swiss-Prot
      A0A0P0WS72, Q9LHY9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      852244..854468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026261.2 → XP_025882046.1  B3 domain-containing protein Os06g0112300 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WS72, Q9LHY9
      UniProtKB/TrEMBL
      A2Y8H3
      Conserved Domains (1) summary
      pfam02362
      Location:55 → 153
      B3; B3 DNA binding domain

    2. XM_066311125.1 → XP_066167222.1  B3 domain-containing protein Os06g0112300 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WS72, Q9LHY9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHY9.1 GenPept UniProtKB/Swiss-Prot:Q9LHY9

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