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    LOC4330583 cellulose synthase-like protein E2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330583, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4330583
    Gene description
    cellulose synthase-like protein E2
    Locus tag
    OSNPB_020725300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLE2; OsCslE2; OJ1124_G07.15; OJ1124_G07.14-1; OJ1124_G07.14-2
    Expression
    Ubiquitous expression in flowers (RPKM 18.0), flower buds (RPKM 17.4) and 6 other tissues See more
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    Genomic context

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    See LOC4330583 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30640580..30645541)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30148767..30153830)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene altered inheritance of mitochondria protein 32 Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene protein NOI4 Neighboring gene early nodulin-like protein 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase-like protein E2
    Names
    LOC_Os02g49332
    P0685G12.44-1
    P0685G12.44-2
    cellulose synthase-like protein OsCslE2
    cellulose synthase-like protein OsCslE2-like
    putative cellulose synthase-like protein OsCslE2
    NP_001388889.1
    NP_001388890.1
    XP_066163148.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401960.1 → NP_001388889.1  cellulose synthase-like protein E2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK101487
      UniProtKB/Swiss-Prot
      B7ERT8, Q0DXZ1, Q944E3
      UniProtKB/TrEMBL
      B8AHQ2

    2. NM_001401961.1 → NP_001388890.1  cellulose synthase-like protein E2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK120054, AP014958
      UniProtKB/TrEMBL
      A0A0P0VP88, B7F5F9, Q6ZFN3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30640580..30645541
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307051.1 → XP_066163148.1  cellulose synthase-like protein E2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VP88, B7F5F9, Q6ZFN3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DXZ1.1 GenPept UniProtKB/Swiss-Prot:Q0DXZ1

    Gene LinkOut

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