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    LOC4341063 protein BOLA4, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341063, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341063
    Gene description
    protein BOLA4, chloroplastic/mitochondrial
    Locus tag
    OSNPB_060484600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BolA-like
    Expression
    Broad expression in leaves before flowering (RPKM 26.0), leaves after flowering (RPKM 22.2) and 6 other tissues See more
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    Genomic context

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    See LOC4341063 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (17358385..17361963)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (16509311..16513000)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341061 Neighboring gene uncharacterized LOC4341062 Neighboring gene uncharacterized LOC9266936 Neighboring gene protein SAWADEE HOMEODOMAIN HOMOLOG 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein BOLA4, chloroplastic/mitochondrial
    Names
    OSJNBb0026F02.25
    Os06g0484600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      17358385..17361963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785665.3 → XP_015641151.1  protein BOLA4, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      B8B2E6, B9FTC6, Q67VQ4
      Conserved Domains (1) summary
      pfam01722
      Location:94 → 161
      BolA; BolA-like protein
    Nucleotide Protein
    Heading Accession and Version

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