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    LOC9270831 uncharacterized LOC9270831 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270831, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9270831
    Gene description
    uncharacterized LOC9270831
    Locus tag
    OSNPB_040610100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 7.6), leaves before flowering (RPKM 6.8) and 6 other tissues See more
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    Genomic context

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    See LOC9270831 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31428041..31433165, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30920362..30925674, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336942 Neighboring gene uncharacterized LOC4336943 Neighboring gene uncharacterized LOC4336945 Neighboring gene ethylene-responsive transcription factor 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC9270831

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31428041..31433165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310005.1 → XP_066166102.1  uncharacterized protein LOC9270831 isoform X7

    2. XM_066310003.1 → XP_066166100.1  uncharacterized protein LOC9270831 isoform X5

    3. XM_026025033.2 → XP_025880818.1  uncharacterized protein LOC9270831 isoform X2

      UniProtKB/TrEMBL
      Q01JT2, Q7XPL9
      Conserved Domains (1) summary
      pfam03004
      Location:678 → 800
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    4. XM_066310004.1 → XP_066166101.1  uncharacterized protein LOC9270831 isoform X6

      UniProtKB/TrEMBL
      B8ATX4

    5. XM_026025034.2 → XP_025880819.1  uncharacterized protein LOC9270831 isoform X3

      UniProtKB/TrEMBL
      Q01JT2, Q7XPL9
      Conserved Domains (1) summary
      pfam03004
      Location:678 → 800
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    6. XM_015781705.3 → XP_015637191.1  uncharacterized protein LOC9270831 isoform X4

      UniProtKB/TrEMBL
      Q01JT2, Q7XPL9
      Conserved Domains (1) summary
      pfam03004
      Location:679 → 801
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    7. XM_026025032.2 → XP_025880817.1  uncharacterized protein LOC9270831 isoform X1

      UniProtKB/TrEMBL
      Q01JT2, Q7XPL9
      Conserved Domains (1) summary
      pfam03004
      Location:679 → 801
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    8. XM_015781708.3 → XP_015637194.1  uncharacterized protein LOC9270831 isoform X8

      UniProtKB/TrEMBL
      Q01JT2, Q7XPL9
      Conserved Domains (1) summary
      pfam03004
      Location:679 → 801
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    RNA

    1. XR_001545666.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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