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    LOC4352160 alpha-dioxygenase PIOX-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352160, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352160
    Gene description
    alpha-dioxygenase PIOX-like
    Locus tag
    OSNPB_120448900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 45.9) and leaves after flowering (RPKM 1.5) See more
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    Genomic context

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    See LOC4352160 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (15759461..15769829, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (15330146..15340526, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene putative bifunctional dihydrofolate reductase-thymidylate synthase Neighboring gene uncharacterized LOC136354846 Neighboring gene uncharacterized LOC107279730 Neighboring gene uncharacterized LOC107279712

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Crystal structures of α-dioxygenase from Oryza sativa: insights into substrate binding and activation by hydrogen peroxide. Zhu G, et al. Protein Sci, 2013 Oct. PMID 23934749, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-dioxygenase PIOX-like
    Names
    Os12g0448900
    alpha-dioxygenase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      15759461..15769829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764901.3 → XP_015620387.1  alpha-dioxygenase PIOX-like isoform X2

      UniProtKB/TrEMBL
      H2KX19
      Conserved Domains (1) summary
      PLN02283
      Location:1 → 509
      PLN02283; alpha-dioxygenase

    2. XM_015764900.3 → XP_015620386.1  alpha-dioxygenase PIOX-like isoform X1

      UniProtKB/Swiss-Prot
      Q0INH8, Q2QRV3, Q9M5J1
      UniProtKB/TrEMBL
      A0A8J8Y785, A2ZK43, A3CGZ5
      Conserved Domains (1) summary
      PLN02283
      Location:1 → 618
      PLN02283; alpha-dioxygenase
    Nucleotide Protein
    Heading Accession and Version

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