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    LOC4333103 glucose-6-phosphate 1-dehydrogenase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333103, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333103
    Gene description
    glucose-6-phosphate 1-dehydrogenase, chloroplastic
    Locus tag
    OSNPB_030412800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 51.6), roots after flowering (RPKM 29.7) and 3 other tissues See more
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    Genomic context

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    See LOC4333103 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17523190..17527715)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17067729..17072249)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333101 Neighboring gene uncharacterized LOC4333102 Neighboring gene DEK domain-containing chromatin-associated protein 4 Neighboring gene nuclear transcription factor Y subunit B-8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucose-6-phosphate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt, oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucose-6-phosphate 1-dehydrogenase, chloroplastic
    Names
    Os03g0412800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      17523190..17527715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773178.3 → XP_015628664.1  glucose-6-phosphate 1-dehydrogenase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8AJR1, Q0DR68, Q75IZ9
      Conserved Domains (1) summary
      PLN02640
      Location:43 → 577
      PLN02640; glucose-6-phosphate 1-dehydrogenase

    2. XM_015773179.3 → XP_015628665.1  glucose-6-phosphate 1-dehydrogenase, chloroplastic isoform X2

      UniProtKB/TrEMBL
      Q10JP5
      Conserved Domains (1) summary
      PLN02640
      Location:1 → 451
      PLN02640; glucose-6-phosphate 1-dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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