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    LOC4326256 GDSL esterase/lipase At1g28600-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326256, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326256
    Gene description
    GDSL esterase/lipase At1g28600-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1159_D09.16-1; OJ1159_D09.16-2
    Expression
    Broad expression in roots before flowering (RPKM 6.5), roots after flowering (RPKM 6.2) and 5 other tissues See more
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    Genomic context

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    See LOC4326256 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26830776..26855635)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26249309..26274201)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g28600 Neighboring gene GDSL esterase/lipase At1g28600 Neighboring gene uncharacterized LOC136357136 Neighboring gene uncharacterized LOC136357138 Neighboring gene uncharacterized LOC4326258 Neighboring gene GDSL esterase/lipase At1g28600

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At1g28600-like; GDSL esterase/lipase At1g31550-like
    Names
    lipase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26830776..26855635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311929.1 → XP_066168026.1  GDSL esterase/lipase At1g31550-like isoform X4

      UniProtKB/TrEMBL
      B7E7F7, Q5VP19

    2. XM_066311925.1 → XP_066168022.1  GDSL esterase/lipase At1g28600-like isoform X2

    3. XM_066311924.1 → XP_066168021.1  GDSL esterase/lipase At1g28600-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0V5W8, A0A0P0V5Y3, Q5VP20

    4. XM_066311928.1 → XP_066168025.1  GDSL esterase/lipase At1g28600-like isoform X3

      UniProtKB/TrEMBL
      A0A0P0V5W8
    Nucleotide Protein
    Heading Accession and Version

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