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    LOC4325684 putative glutamine amidotransferase GAT1_2.1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325684, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325684
    Gene description
    putative glutamine amidotransferase GAT1_2.1
    Locus tag
    OSNPB_010138800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325684 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2079378..2081242)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2071797..2073615)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325682 Neighboring gene uncharacterized LOC4325683 Neighboring gene L-Ala-D/L-amino acid epimerase Neighboring gene reticulon-like protein B9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative glutamine amidotransferase GAT1_2.1
    Names
    Os01g0138800
    P0443D08.44
    protein NtpR

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2079378..2081242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765491.3 → XP_015620977.1  putative glutamine amidotransferase GAT1_2.1 isoform X2

      UniProtKB/TrEMBL
      B8AD57
      Conserved Domains (2) summary
      cd01745
      Location:14 → 260
      GATase1_2; Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain
      pfam07722
      Location:12 → 255
      Peptidase_C26; Peptidase C26

    2. XM_015765490.3 → XP_015620976.1  putative glutamine amidotransferase GAT1_2.1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0UYH7, B8AD57, Q5ZC52
      Conserved Domains (2) summary
      cd01745
      Location:14 → 260
      GATase1_2; Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain
      pfam07722
      Location:12 → 255
      Peptidase_C26; Peptidase C26
    Nucleotide Protein
    Heading Accession and Version

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