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    LOC4345838 uncharacterized LOC4345838 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345838, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345838
    Gene description
    uncharacterized LOC4345838
    Locus tag
    OSNPB_080478100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1666_A04.18
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    Genomic context

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    See LOC4345838 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23716475..23718824, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23576734..23579153, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transcription factor AIG1 Neighboring gene vegetative cell wall protein gp1 Neighboring gene ATP synthase subunit d, mitochondrial Neighboring gene uncharacterized LOC112939835

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345838
    Names
    IMPACT family member in pol 5'region
    Os08g0478100
    thymidylate synthase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23716475..23718824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795149.3 → XP_015650635.1  uncharacterized protein LOC4345838

      UniProtKB/TrEMBL
      A3BU48, B8BBS2, Q6ZJC5
      Conserved Domains (1) summary
      pfam01205
      Location:80 → 179
      UPF0029; Uncharacterized protein family UPF0029
    Nucleotide Protein
    Heading Accession and Version

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