U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4328079 dehydrogenase/reductase SDR family member FEY [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328079, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4328079
    Gene description
    dehydrogenase/reductase SDR family member FEY
    Locus tag
    OSNPB_020116500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1442_E05.18
    Expression
    Ubiquitous expression in roots after flowering (RPKM 12.5), leaves after flowering (RPKM 10.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4328079 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (877579..882521)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (870644..875797)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable metal-nicotianamine transporter YSL7 Neighboring gene probable metal-nicotianamine transporter YSL8 Neighboring gene transcription factor ILR3 Neighboring gene phytosulfokine receptor 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    dehydrogenase/reductase SDR family member FEY
    Names
    Os02g0116500
    protochlorophyllide reductase homolog
    putative forever young oxidoreductase
    retinol dehydrogenase 12

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      877579..882521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770879.3 → XP_015626365.1  dehydrogenase/reductase SDR family member FEY

      UniProtKB/TrEMBL
      A0A0P0VDX0, A0A8J8YT89, A2X042, A3A2F8, Q6ZGM5
      Conserved Domains (1) summary
      cl21454
      Location:80 → 367
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials