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    LOC4333650 type IV inositol polyphosphate 5-phosphatase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333650, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4333650
    Gene description
    type IV inositol polyphosphate 5-phosphatase 7
    Locus tag
    OSNPB_030663700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333650 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (26931550..26936442)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26064083..26069040)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene alpha-amylase/trypsin inhibitor Neighboring gene uncharacterized LOC136355871 Neighboring gene uncharacterized LOC136355675 Neighboring gene 63 kDa globulin-like protein Neighboring gene non-specific lipid-transfer protein EPAD1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol-polyphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    type IV inositol polyphosphate 5-phosphatase 7
    Names
    Os03g0663700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      26931550..26936442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776753.3 → XP_015632239.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X1

      UniProtKB/TrEMBL
      Q75GX7
      Conserved Domains (1) summary
      cl00490
      Location:14 → 528
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. XM_066308614.1 → XP_066164711.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X3

      UniProtKB/TrEMBL
      Q75GX7

    3. XM_015776754.3 → XP_015632240.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X2

      UniProtKB/TrEMBL
      Q75GX7
      Conserved Domains (1) summary
      cl00490
      Location:1 → 527
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    4. XM_066308615.1 → XP_066164712.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X5

      UniProtKB/TrEMBL
      Q75GX7

    5. XM_015776756.3 → XP_015632242.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X4

      UniProtKB/TrEMBL
      Q75GX7
      Conserved Domains (1) summary
      cl00490
      Location:14 → 527
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    6. XM_015776757.3 → XP_015632243.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X6

      UniProtKB/TrEMBL
      Q75GX7
      Conserved Domains (1) summary
      cl00490
      Location:1 → 526
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    7. XM_026024130.2 → XP_025879915.1  type IV inositol polyphosphate 5-phosphatase 7 isoform X7

      UniProtKB/TrEMBL
      Q75GX7
      Conserved Domains (1) summary
      cl00490
      Location:1 → 525
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
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