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    LOC4332139 AP-3 complex subunit sigma [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332139, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332139
    Gene description
    AP-3 complex subunit sigma
    Locus tag
    OSNPB_030228400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 20.5), flowers (RPKM 17.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332139 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6831059..6834359)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6782667..6785976)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g01500 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene uncharacterized LOC4332140 Neighboring gene uncharacterized LOC136355726

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-3 complex subunit sigma
    Names
    Os03g0228400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6831059..6834359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775383.3 → XP_015630869.1  AP-3 complex subunit sigma

      UniProtKB/TrEMBL
      B9F6L5, Q0DTS3, Q10PM8
      Conserved Domains (1) summary
      cl38905
      Location:1 → 145
      longin-like; Longin-like domains

    2. XM_015775385.3 → XP_015630871.1  AP-3 complex subunit sigma

      UniProtKB/TrEMBL
      B9F6L5, Q0DTS3, Q10PM8
      Conserved Domains (1) summary
      cl38905
      Location:1 → 145
      longin-like; Longin-like domains
    Nucleotide Protein
    Heading Accession and Version

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