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    LOC4332449 ABC transporter G family member 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332449, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4332449
    Gene description
    ABC transporter G family member 5-like
    Locus tag
    OSNPB_030281900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RCN1; WBC5; OsWBC5; OsABCG5; OsJ_10379
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    Genomic context

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    See LOC4332449 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9704899..9707622)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9654120..9657029)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene calcium-transporting ATPase 4, endoplasmic reticulum-type Neighboring gene protein SIEL Neighboring gene ABC transporter G family member 6 Neighboring gene uncharacterized LOC9270633

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ethylene Biosynthesis Is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots. Yamauchi T, et al. Plant Physiol, 2015 Sep. PMID 26036614, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The expression of ACS1, CUT1L, and RCN1/OsABCG5 was induced predominantly in the outer part of roots under stagnant conditions.
      Title: Ethylene Biosynthesis Is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aBC transporter G family member 5
    Names
    ABC transporter ABCG.5
    ABC transporter G family member 5
    Os03g0281900
    Protein REDUCED CULM NUMBER 1
    White-brown complex homolog protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417502.1 → NP_001404431.1  aBC transporter G family member 5

      Status: VALIDATED

      Source sequence(s)
      AK072135, AP014959, CI192002, CI235863, CI332622
      UniProtKB/Swiss-Prot
      A0A0P0VW96, Q8H8V7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9704899..9707622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H8V7.1 GenPept UniProtKB/Swiss-Prot:Q8H8V7

    Gene LinkOut

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