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    LOC4324772 5'-3' exonuclease [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324772, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324772
    Gene description
    5'-3' exonuclease
    Locus tag
    OSNPB_010874800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 19.0), leaves after flowering (RPKM 16.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324772 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37955093..37959015, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene myb-related protein 308 Neighboring gene patellin-3 Neighboring gene serine hydroxymethyltransferase 7 Neighboring gene uncharacterized LOC4324774

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-flap endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication, Okazaki fragment processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324772
    Names
    Os01g0874800
    P0648C09.11
    P0698A10.12-1
    P0698A10.12-2
    P0698A10.12-3
    putative DNA polymerase I 3'-5' exo domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      37955093..37959015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787910.2 → XP_015643396.1  uncharacterized protein LOC4324772 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KE57, A0A8U0WP90, A0A9K3Y8J2, B9EUX7, Q0JHA5, Q5N8X0, Q7F4J1, Q8RYY9
      Conserved Domains (1) summary
      smart00475
      Location:103 → 326
      53EXOc; 5'-3' exonuclease

    2. XM_015787987.2 → XP_015643473.1  uncharacterized protein LOC4324772 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VB12, A0A9K3Y740, Q5N8W9
      Conserved Domains (1) summary
      smart00475
      Location:103 → 319
      53EXOc; 5'-3' exonuclease

    RNA

    1. XR_001546879.2 RNA Sequence

    2. XR_003240245.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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