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    LOC4335780 glucan endo-1,3-beta-glucosidase 14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335780, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4335780
    Gene description
    glucan endo-1,3-beta-glucosidase 14
    Locus tag
    OSNPB_040412300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 52.7), flowers (RPKM 25.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20756903..20768118)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20372886..20379036)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335778 Neighboring gene uncharacterized LOC4335779 Neighboring gene uncharacterized LOC9271244 Neighboring gene alpha carbonic anhydrase 1, chloroplastic Neighboring gene transfer RNA cysteine (anticodon GCA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucan endo-1,3-beta-glucosidase 14
    Names
    Os04g0412300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      20756903..20768118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309629.1 → XP_066165726.1  glucan endo-1,3-beta-glucosidase 14

      UniProtKB/TrEMBL
      A0A0P0W9W3, A0A0P0WA32, Q0JDD4, Q7XVG8

    2. XM_015781186.3 → XP_015636672.1  glucan endo-1,3-beta-glucosidase 14

      UniProtKB/TrEMBL
      A0A0P0W9W3, A0A0P0WA32, Q0JDD4, Q7XVG8
      Conserved Domains (1) summary
      cl23725
      Location:42 → 358
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version

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