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    LOC4332065 pentatricopeptide repeat-containing protein At1g09900 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332065, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332065
    Gene description
    pentatricopeptide repeat-containing protein At1g09900
    Locus tag
    OSNPB_030216300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 3.2), roots before flowering (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6162802..6166248)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6115343..6118758)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 8 Neighboring gene uncharacterized LOC136355891 Neighboring gene putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial Neighboring gene uncharacterized LOC4332067 Neighboring gene probable glucan 1,3-alpha-glucosidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g09900
    Names
    Os03g0216300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6162802..6166248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772857.3 → XP_015628343.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      B8AQT9, Q0DTZ2, Q10PZ2
      Conserved Domains (3) summary
      PLN03218
      Location:49 → 407
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:188 → 215
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:392 → 440
      PPR_2; PPR repeat family

    2. XM_015772858.3 → XP_015628344.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      B8AQT9, Q0DTZ2, Q10PZ2
      Conserved Domains (3) summary
      PLN03218
      Location:49 → 407
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:188 → 215
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:392 → 440
      PPR_2; PPR repeat family

    3. XM_015772859.3 → XP_015628345.1  pentatricopeptide repeat-containing protein At1g09900

      UniProtKB/TrEMBL
      B8AQT9, Q0DTZ2, Q10PZ2
      Conserved Domains (3) summary
      PLN03218
      Location:49 → 407
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:188 → 215
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:392 → 440
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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