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    LOC9271676 phenylalanine ammonia-lyase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271676, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9271676
    Gene description
    phenylalanine ammonia-lyase-like
    Locus tag
    OSNPB_040518100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 41.6), flowers (RPKM 39.6) and 5 other tissues See more
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    Genomic context

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    See LOC9271676 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26409060..26417482, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25906856..25915288, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene auxin-induced protein 15A Neighboring gene adenosine kinase 2 Neighboring gene phenylalanine ammonia-lyase Neighboring gene uncharacterized LOC9272664

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ammonia-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-phenylalanine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phenylalanine ammonia-lyase-like
    Names
    Os04g0518100
    Os04g0518200
    phenylalanine ammonia-lyase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26409060..26417482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309868.1 → XP_066165965.1  phenylalanine ammonia-lyase-like

      UniProtKB/TrEMBL
      A0A5S6RD74, A2XVK1, Q01J46, Q7F933, Q7X720, Q84VE0

    2. XM_066309866.1 → XP_066165963.1  phenylalanine ammonia-lyase-like

      UniProtKB/TrEMBL
      A0A5S6RD74, A2XVK1, Q01J46, Q7F933, Q7X720, Q84VE0

    3. XM_066309864.1 → XP_066165961.1  phenylalanine ammonia-lyase-like

      UniProtKB/TrEMBL
      A0A5S6RD74, A2XVK1, Q01J46, Q7F933, Q7X720, Q84VE0

    4. XM_066309867.1 → XP_066165964.1  phenylalanine ammonia-lyase-like

      UniProtKB/TrEMBL
      A0A5S6RD74, A2XVK1, Q01J46, Q7F933, Q7X720, Q84VE0

    5. XM_066309863.1 → XP_066165960.1  phenylalanine ammonia-lyase-like

      UniProtKB/TrEMBL
      A0A5S6RD74, A2XVK1, Q01J46, Q7F933, Q7X720, Q84VE0

    6. XM_066309865.1 → XP_066165962.1  phenylalanine ammonia-lyase-like

      UniProtKB/TrEMBL
      A0A5S6RD74, A2XVK1, Q01J46, Q7F933, Q7X720, Q84VE0
    Nucleotide Protein
    Heading Accession and Version

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