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    LOC4345853 U-box domain-containing protein 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345853, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345853
    Gene description
    U-box domain-containing protein 15
    Locus tag
    OSNPB_080481200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 7.4), flowers (RPKM 4.6) and 3 other tissues See more
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    Genomic context

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    See LOC4345853 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23933638..23936379, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23793799..23796708, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939915 Neighboring gene pentatricopeptide repeat-containing protein At1g09410, mitochondrial Neighboring gene homeobox-leucine zipper protein HOX20-like Neighboring gene uncharacterized LOC4345855

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 15
    Names
    OSJNBb0092C08.24
    Os08g0481200
    putative Avr9/Cf-9 rapidly elicited protein
    putative spotted leaf 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23933638..23936379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793497.3 → XP_015648983.1  U-box domain-containing protein 15

      UniProtKB/TrEMBL
      A0A0P0XH80, A2YWB9, A3BU66, Q6Z250
      Conserved Domains (4) summary
      smart00504
      Location:272 → 335
      Ubox; Modified RING finger domain
      PLN03200
      Location:410 → 534
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:565 → 596
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:407 → 432
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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