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    LOC4329576 chaperone protein ClpB1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329576, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329576
    Gene description
    chaperone protein ClpB1
    Locus tag
    OSNPB_020537400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 11.6), flower buds (RPKM 9.2) and 4 other tissues See more
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    Genomic context

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    See LOC4329576 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (20338253..20342803)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19860019..19864616)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At5g56420 Neighboring gene uncharacterized LOC107279953 Neighboring gene transcription factor E2FB Neighboring gene 2-Cys peroxiredoxin BAS1, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein ClpB1
    Names
    Os02g0537400
    P0508B05.20
    putative endopeptidase Clp ATP-binding chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      20338253..20342803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768631.3 → XP_015624117.1  chaperone protein ClpB1

      UniProtKB/TrEMBL
      A2X5R3, A3A7P8, Q6ETV8
      Conserved Domains (4) summary
      cd00009
      Location:199 → 360
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      smart00382
      Location:216 → 360
      AAA; ATPases associated with a variety of cellular activities
      pfam07724
      Location:519 → 681
      AAA_2; AAA domain (Cdc48 subfamily)
      pfam10431
      Location:688 → 768
      ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    Nucleotide Protein
    Heading Accession and Version

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