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    LOC4343683 protein FREE1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343683, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343683
    Gene description
    protein FREE1
    Locus tag
    OSNPB_070573300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1699_E05.17
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    Genomic context

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    See LOC4343683 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23399191..23403088)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23169759..23173690)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene adenylyl-sulfate kinase 3 Neighboring gene uncharacterized LOC4343682 Neighboring gene protein neprosin Neighboring gene uncharacterized LOC112939660

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intralumenal vesicle formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multivesicular body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FREE1
    Names
    Os07g0573300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23399191..23403088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789247.3 → XP_015644733.1  protein FREE1

      UniProtKB/TrEMBL
      A0A0N7KNQ3, A2YMW0, Q6ZL20
      Conserved Domains (2) summary
      smart00064
      Location:364 → 430
      FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
      cd00934
      Location:219 → 292
      PTB; Phosphotyrosine-binding (PTB) PH-like fold
    Nucleotide Protein
    Heading Accession and Version

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