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    LOC4325805 uncharacterized LOC4325805 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325805, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325805
    Gene description
    uncharacterized LOC4325805
    Locus tag
    OSNPB_010133500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 7.8), mature seeds (RPKM 7.5) and 6 other tissues See more
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    Genomic context

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    See LOC4325805 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1857537..1863911)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1849839..1856301)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325803 Neighboring gene plastidic glucose transporter 4 Neighboring gene glycosyltransferase BC10-like Neighboring gene glycosyltransferase BC10-like Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plastid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325805
    Names
    OSJNBa0083M16.21-1
    OSJNBa0083M16.21-2
    Os01g0133500
    beta-lactamase-like protein 2
    endoribonuclease LACTB2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1857537..1863911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766316.3 → XP_015621802.1  uncharacterized protein LOC4325805

      UniProtKB/TrEMBL
      A0A0P0UXY3, B8AD39, B9EZD1, Q5ZCN1
      Conserved Domains (2) summary
      smart00849
      Location:313 → 396
      Lactamase_B; Metallo-beta-lactamase superfamily
      COG0491
      Location:315 → 434
      GloB; Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II [General function prediction only]

    2. XM_015766318.2 → XP_015621804.1  uncharacterized protein LOC4325805

      UniProtKB/TrEMBL
      A0A0P0UXY3, B8AD39, B9EZD1, Q5ZCN1
      Conserved Domains (2) summary
      smart00849
      Location:313 → 396
      Lactamase_B; Metallo-beta-lactamase superfamily
      COG0491
      Location:315 → 434
      GloB; Glyoxylase or a related metal-dependent hydrolase, beta-lactamase superfamily II [General function prediction only]

    RNA

    1. XR_010741607.1 RNA Sequence

    2. XR_010741608.1 RNA Sequence

    3. XR_010741609.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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