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    LOC4327679 transcription factor LATE FLOWERING-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327679, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327679
    Gene description
    transcription factor LATE FLOWERING-like
    Locus tag
    OSNPB_010707500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 3.3), flower buds (RPKM 1.0) and 3 other tissues See more
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    Genomic context

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    See LOC4327679 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29971098..29974028, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29382529..29385863, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene vesicle transport v-SNARE 13 Neighboring gene protein MAIN-LIKE 1-like Neighboring gene uncharacterized LOC136355482 Neighboring gene uncharacterized LOC136355483 Neighboring gene single myb histone 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, et al. Plant Physiol, 2006 Aug. PMID 16896230, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor LATE FLOWERING-like
    Names
    Os01g0707500
    P0510F09.19-1
    P0692C11.41-1
    bHLH transcription factor-like
    transcription factor bHLH69

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29971098..29974028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773858.3 → XP_015629344.1  transcription factor LATE FLOWERING-like

      UniProtKB/TrEMBL
      A0A2H4CAL8, A0A8J8XRQ7, A2WUA1, Q0JJZ2, Q7F4X6, Q8S0N2
      Conserved Domains (1) summary
      cd11454
      Location:282 → 340
      bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins

    2. XM_015773842.3 → XP_015629328.1  transcription factor LATE FLOWERING-like

      UniProtKB/TrEMBL
      A0A2H4CAL8, A0A8J8XRQ7, A2WUA1, Q0JJZ2, Q7F4X6, Q8S0N2
      Conserved Domains (1) summary
      cd11454
      Location:282 → 340
      bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins

    RNA

    1. XR_010738881.1 RNA Sequence

    2. XR_010738882.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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