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    LOC4338912 fructose-1,6-bisphosphatase, cytosolic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338912, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338912
    Gene description
    fructose-1,6-bisphosphatase, cytosolic
    Locus tag
    OSNPB_050438600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 12.7), flower buds (RPKM 12.3) and 6 other tissues See more
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    Genomic context

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    See LOC4338912 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21600750..21603632, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21493904..21496845, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene autonomous transposable element EN-1 mosaic protein Neighboring gene uncharacterized LOC136356434 Neighboring gene soluble inorganic pyrophosphatase Neighboring gene histone H3.2 Neighboring gene actin-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fructose 1,6-bisphosphate 1-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 1,6-bisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sucrose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fructose-1,6-bisphosphatase, cytosolic
    Names
    Os05g0438600
    fructose-1,6-bisphosphatase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21600750..21603632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784686.3 → XP_015640172.1  fructose-1,6-bisphosphatase, cytosolic

      UniProtKB/TrEMBL
      A7J2C3, B8AYU2, B9FPT4, Q75HX2
      Conserved Domains (1) summary
      PLN02262
      Location:1 → 338
      PLN02262; fructose-1,6-bisphosphatase
    Nucleotide Protein
    Heading Accession and Version

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