U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4349047 F-box/LRR-repeat protein At3g48880 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349047, updated on 13-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4349047
    Gene description
    F-box/LRR-repeat protein At3g48880
    Locus tag
    OSNPB_100502900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 33.0), roots after flowering (RPKM 28.3) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4349047 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19881779..19886081, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19190119..19194451, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene membrane steroid-binding protein 1-like Neighboring gene uncharacterized LOC112936687 Neighboring gene LIM domain-containing protein PLIM2b-like Neighboring gene folylpolyglutamate synthase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    F-box/LRR-repeat protein At3g48880
    Names
    F-box domain-containing protein
    Os10g0502900

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19881779..19886081 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757242.3 → XP_015612728.1  F-box/LRR-repeat protein At3g48880

      UniProtKB/TrEMBL
      A0A8J8XDH2, A3C690, B8BHQ9, Q0IWK7, Q337F4
      Conserved Domains (3) summary
      cd09293
      Location:170 → 229
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:123 → 148
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:16 → 56
      F-box-like; F-box-like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials