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    LOC4337320 probable plastid-lipid-associated protein 13, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337320, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4337320
    Gene description
    probable plastid-lipid-associated protein 13, chloroplastic
    Locus tag
    OSNPB_040665800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337320 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34506252..34509793)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33986387..33989381)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269403 Neighboring gene zinc finger CCCH domain-containing protein 31-like Neighboring gene uncharacterized LOC107278570 Neighboring gene indole-3-acetate O-methyltransferase 1 Neighboring gene indole-3-acetate O-methyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable plastid-lipid-associated protein 13, chloroplastic
    Names
    Os04g0665800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419923.1 → NP_001406852.1  probable plastid-lipid-associated protein 13, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB656505, CB658860, CI288213
      UniProtKB/TrEMBL
      A0A5S6RC57, B8AVZ8, B9FD63, Q01MN2, Q7XPK0, Q84P62

    RNA

    1. NR_185120.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK107564, AP014960, CB656505, CB658860, CI288213

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34506252..34509793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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