U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4331648 transcription factor-like protein DPB [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331648, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4331648
    Gene description
    transcription factor-like protein DPB
    Locus tag
    OSNPB_030152100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 11.9), leaves before flowering (RPKM 4.8) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4331648 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2879324..2885869)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2870326..2876851)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ras-related protein RABF1 Neighboring gene heavy metal-associated isoprenylated plant protein 3 Neighboring gene peroxidase 44 Neighboring gene 4-coumarate--CoA ligase-like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor-like protein DPB
    Names
    E2F dimerization factor
    Os03g0152100

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2879324..2885869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772519.3 → XP_015628005.1  transcription factor-like protein DPB isoform X2

      UniProtKB/TrEMBL
      B9FB35
      Conserved Domains (3) summary
      cd14458
      Location:213 → 259
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:122 → 208
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:215 → 302
      DP; Transcription factor DP

    2. XM_015772515.3 → XP_015628001.1  transcription factor-like protein DPB isoform X1

      UniProtKB/TrEMBL
      B8ANC9, B9FB35, Q0DV34, Q84VA0
      Conserved Domains (2) summary
      pfam02319
      Location:122 → 208
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:215 → 352
      DP; Transcription factor DP

    RNA

    1. XR_010740091.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials