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    LOC4343074 histone-lysine N-methyltransferase family member SUVH2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343074, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343074
    Gene description
    histone-lysine N-methyltransferase family member SUVH2
    Locus tag
    OSNPB_070435900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 10.6), roots after flowering (RPKM 9.3) and 6 other tissues See more
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    Genomic context

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    See LOC4343074 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (14719911..14726804)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14563266..14570154)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene photosystem I reaction center subunit IV, chloroplastic Neighboring gene ribosome biogenesis protein BOP1 homolog Neighboring gene uncharacterized LOC9268481 Neighboring gene uncharacterized LOC107278340

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase family member SUVH2
    Names
    OSJNBb0095H08.7
    Os07g0435900
    putative SET-domain transcriptional regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      14719911..14726804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312614.1 → XP_066168711.1  histone-lysine N-methyltransferase family member SUVH2

      UniProtKB/TrEMBL
      A0A0P0X5P7, A3BJ61, Q7XHM7

    2. XM_015792076.3 → XP_015647562.1  histone-lysine N-methyltransferase family member SUVH2

      UniProtKB/TrEMBL
      A0A0P0X5P7, A3BJ61, Q7XHM7
      Conserved Domains (2) summary
      smart00466
      Location:235 → 392
      SRA; SET and RING finger associated domain
      cl40432
      Location:447 → 673
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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