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    LOC4331214 DEAD-box ATP-dependent RNA helicase 48-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331214, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331214
    Gene description
    DEAD-box ATP-dependent RNA helicase 48-like
    Locus tag
    OSNPB_020826100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_08955
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 16.4), roots after flowering (RPKM 15.2) and 6 other tissues See more
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    Genomic context

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    See LOC4331214 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35502096..35507076, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 48-like Neighboring gene uncharacterized LOC4331212 Neighboring gene uncharacterized LOC4331213 Neighboring gene uncharacterized LOC107278546 Neighboring gene spore coat polysaccharide biosynthesis protein SpsK Neighboring gene uncharacterized LOC4331216

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 48; dEAD-box ATP-dependent RNA helicase 48
    Names
    LOC_Os02g57980
    P0452F04.14
    putative ATP-dependent RNA helicase
    XP_015626491.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417102.1 → NP_001404031.1  dEAD-box ATP-dependent RNA helicase 48

      Status: VALIDATED

      Source sequence(s)
      AK101090, AP014958, CB636416, CI367625, CI736568
      UniProtKB/Swiss-Prot
      B9F4M0, Q6K7R9
      UniProtKB/TrEMBL
      B8B1L0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35502096..35507076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771005.2 → XP_015626491.1  DEAD-box ATP-dependent RNA helicase 48

      UniProtKB/Swiss-Prot
      Q6K7R9
      Conserved Domains (1) summary
      COG0513
      Location:340 → 796
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K7R9.1 GenPept UniProtKB/Swiss-Prot:Q6K7R9

    Gene LinkOut

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    Research Materials