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    LOC4347936 U-box domain-containing protein 33 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347936, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4347936
    Gene description
    U-box domain-containing protein 33
    Locus tag
    OSNPB_100100500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 21.9), leaves after flowering (RPKM 14.4) and 6 other tissues See more
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    Genomic context

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    See LOC4347936 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (71944..77825)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (66922..72975)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein TIC 62, chloroplastic-like Neighboring gene probable pyridoxal 5'-phosphate synthase subunit PDX1.2 Neighboring gene uncharacterized LOC107279128

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 33
    Names
    Os10g0100500
    putative protein kinase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      71944..77825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759479.3 → XP_015614965.1  U-box domain-containing protein 33 isoform X1

      UniProtKB/TrEMBL
      B8BFI9, Q0IZE2, Q33BK6
      Conserved Domains (4) summary
      COG1196
      Location:313 → 444
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01989
      Location:48 → 197
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl17238
      Location:754 → 792
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl21453
      Location:503 → 741
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015759480.3 → XP_015614966.1  U-box domain-containing protein 33 isoform X2

      UniProtKB/TrEMBL
      B8BFI9, B9G587
      Conserved Domains (4) summary
      COG1196
      Location:313 → 465
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01989
      Location:48 → 197
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl17238
      Location:730 → 768
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl21453
      Location:479 → 717
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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