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    LOC4328583 uncharacterized LOC4328583 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328583, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328583
    Gene description
    uncharacterized LOC4328583
    Locus tag
    OSNPB_020192200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328583 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5132291..5136364)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5121686..5125737)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein GLUTAMINE DUMPER 6 Neighboring gene protein FLX-like 2 Neighboring gene methyl-CpG-binding domain-containing protein 9 Neighboring gene glucomannan 4-beta-mannosyltransferase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328583
    Names
    Os02g0192200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5132291..5136364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770422.3 → XP_015625908.1  uncharacterized protein LOC4328583

      UniProtKB/TrEMBL
      A0A0P0VFV7, A0A8J8YJF4, A2X1X1, A3A417, Q0E362
      Conserved Domains (4) summary
      cd06410
      Location:9 → 101
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
      smart00575
      Location:600 → 627
      ZnF_PMZ; plant mutator transposase zinc finger
      pfam03108
      Location:144 → 208
      DBD_Tnp_Mut; MuDR family transposase
      cl24015
      Location:342 → 426
      DDE_Tnp_ISL3; Transposase
    Nucleotide Protein
    Heading Accession and Version

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