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    LOC9272429 auxilin-related protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272429, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9272429
    Gene description
    auxilin-related protein 2
    Locus tag
    OSNPB_110661200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 12.3), flower buds (RPKM 8.6) and 6 other tissues See more
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    Genomic context

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    See LOC9272429 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (28504119..28510565)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (26542842..26549301)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g14050, mitochondrial Neighboring gene uncharacterized LOC9269896 Neighboring gene ADP,ATP carrier protein ER-ANT1 Neighboring gene uncharacterized LOC4351066

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin coat disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxilin-related protein 2
    Names
    Os11g0661200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      28504119..28510565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762408.3 → XP_015617894.1  auxilin-related protein 2

      UniProtKB/TrEMBL
      A0A8J8XR74, B8BLP8, B9G8Q7, Q2R031
      Conserved Domains (3) summary
      smart00271
      Location:829 → 886
      DnaJ; DnaJ molecular chaperone homology domain
      COG3064
      Location:486 → 681
      TolA; Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis]
      COG4942
      Location:486 → 573
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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