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    LOC4343550 universal stress protein PHOS32 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343550, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343550
    Gene description
    universal stress protein PHOS32
    Locus tag
    OSNPB_070551400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 24.0), roots after flowering (RPKM 21.8) and 6 other tissues See more
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    Genomic context

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    See LOC4343550 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22124080..22127882, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21894936..21898750, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase B120 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase B120 Neighboring gene probable mixed-linked glucan synthase 9 Neighboring gene probable mixed-linked glucan synthase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    universal stress protein PHOS32
    Names
    CHP-rich zinc finger protein-like
    OSJNBb0041B22.112-1
    OSJNBb0041B22.112-2
    Os07g0551400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22124080..22127882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791965.3 → XP_015647451.1  universal stress protein PHOS32

      UniProtKB/TrEMBL
      A0A0P0X7F5, Q0D5L6, Q7XHV1, Q84S20
      Conserved Domains (1) summary
      cd00293
      Location:57 → 210
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
    Nucleotide Protein
    Heading Accession and Version

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