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    LOC4337561 serine/arginine-rich splicing factor SR45 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337561, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4337561
    Gene description
    serine/arginine-rich splicing factor SR45
    Locus tag
    OSNPB_050105900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337561 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (325112..328548)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (316954..320669)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337559 Neighboring gene protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic Neighboring gene zinc finger transcription factor YY1 Neighboring gene V-type proton ATPase 16 kDa proteolipid subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Zhang XN, et al. Plant Physiol, 2009 Jul. PMID 19403727, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ASAP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor SR45
    Names
    Os05g0105900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      325112..328548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782139.3 → XP_015637625.3  serine/arginine-rich splicing factor SR45 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R8F1, Q0DLE5, Q65XI3

    2. XM_015782140.3 → XP_015637626.3  serine/arginine-rich splicing factor SR45 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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