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    LOC4338358 linoleate 9S-lipoxygenase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338358, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338358
    Gene description
    linoleate 9S-lipoxygenase 6
    Locus tag
    OSNPB_050304600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOX7
    Expression
    Broad expression in leaves before flowering (RPKM 66.9), roots after flowering (RPKM 18.9) and 4 other tissues See more
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    Genomic context

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    See LOC4338358 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13813870..13819779)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13734462..13740531)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene guanosine nucleotide diphosphate dissociation inhibitor 1 Neighboring gene protein FAR-RED IMPAIRED RESPONSE 1-like Neighboring gene uncharacterized LOC4338359 Neighboring gene endo-1,4-beta-xylanase 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    linoleate 9S-lipoxygenase 6
    Names
    Os05g0304600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      13813870..13819779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783699.3 → XP_015639185.1  linoleate 9S-lipoxygenase 6 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WKH4, B8AWC1, Q0DJB6
      Conserved Domains (2) summary
      pfam00305
      Location:175 → 824
      Lipoxygenase
      cl00011
      Location:25 → 150
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

    2. XM_066310727.1 → XP_066166824.1  linoleate 9S-lipoxygenase 6 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WKN7
    Nucleotide Protein
    Heading Accession and Version

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