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    LOC4325861 pectinesterase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325861, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325861
    Gene description
    pectinesterase
    Locus tag
    OSNPB_010788400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 4.1), roots before flowering (RPKM 3.1) and 4 other tissues See more
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    Genomic context

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    See LOC4325861 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34059666..34066422)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33453415..33460087)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355494 Neighboring gene nuclear transport factor 2B Neighboring gene uncharacterized LOC136353472 Neighboring gene disease resistance protein RPS2 Neighboring gene early nodulin-like protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pectinesterase
    Names
    Os01g0788400
    P0415A04.41
    putative pectin esterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34059666..34066422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765656.3 → XP_015621142.1  pectinesterase

      UniProtKB/TrEMBL
      A0A0P0V939, A2WVV7, B9ETP3, Q5ZAW1
      Conserved Domains (1) summary
      PLN02301
      Location:1 → 546
      PLN02301; pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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