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    LOC4345725 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345725, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345725
    Gene description
    1-phosphatidylinositol-3-phosphate 5-kinase FAB1B
    Locus tag
    OSNPB_080450700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1005_H01.27
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    Genomic context

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    See LOC4345725 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (22139716..22150469)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22001100..22011828)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pectinesterase Neighboring gene putative pectinesterase/pectinesterase inhibitor 45 Neighboring gene transcription factor MYB77 Neighboring gene conserved oligomeric Golgi complex subunit 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol-3-phosphate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-phosphatidylinositol-3-phosphate 5-kinase FAB1B
    Names
    1-phosphatidylinositol-3-phosphate 5-kinase-like
    Os08g0450700
    Os08g0450800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      22139716..22150469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794444.3 → XP_015649930.1  1-phosphatidylinositol-3-phosphate 5-kinase FAB1B

      UniProtKB/TrEMBL
      A3BTP9, B8BB93
      Conserved Domains (4) summary
      COG5253
      Location:1211 → 1806
      MSS4; Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
      cd03334
      Location:402 → 674
      Fab1_TCP; TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this ...
      cl28890
      Location:60 → 125
      FYVE_like_SF; FYVE domain like superfamily
      cd17300
      Location:1537 → 1799
      PIPKc_PIKfyve; Phosphatidylinositol phosphate kinase (PIPK) catalytic domain found in 1-phosphatidylinositol-3-phosphate 5-kinase and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials