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    LOC9270211 uncharacterized LOC9270211 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270211, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9270211
    Gene description
    uncharacterized LOC9270211
    Locus tag
    OSNPB_030860000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 12.4), leaves before flowering (RPKM 10.1) and 6 other tissues See more
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    Genomic context

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    See LOC9270211 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37274246..37278343)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36294919..36299448)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276092 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 Neighboring gene probable glutathione S-transferase GSTU1 Neighboring gene uncharacterized LOC4334862 Neighboring gene uncharacterized LOC136355628 Neighboring gene ethylene-response factor C3 Neighboring gene DIBOA-glucoside dioxygenase BX6 Neighboring gene myosin-6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9270211
    Names
    Os03g0860000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37274246..37278343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308453.1 → XP_066164550.1  uncharacterized protein LOC9270211 isoform X1

      UniProtKB/TrEMBL
      Q7Y1E7

    2. XM_066308454.1 → XP_066164551.1  uncharacterized protein LOC9270211 isoform X1

      UniProtKB/TrEMBL
      Q7Y1E7

    3. XM_015775027.3 → XP_015630513.1  uncharacterized protein LOC9270211 isoform X2

      UniProtKB/TrEMBL
      Q7Y1E7
      Conserved Domains (1) summary
      cd06554
      Location:12 → 131
      ASCH_ASC-1_like; ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain ...

    4. XM_066308455.1 → XP_066164552.1  uncharacterized protein LOC9270211 isoform X2

      UniProtKB/TrEMBL
      Q7Y1E7

    RNA

    1. XR_010739967.1 RNA Sequence

    2. XR_010739968.1 RNA Sequence

    3. XR_003241381.2 RNA Sequence

    4. XR_010739969.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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