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    LOC4328488 uncharacterized LOC4328488 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328488, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328488
    Gene description
    uncharacterized LOC4328488
    Locus tag
    OSNPB_020177900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328488 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4311413..4318996)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4302074..4306972)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 2C2 Neighboring gene calmodulin-binding protein 60 C Neighboring gene CBL-interacting serine/threonine-protein kinase 21 Neighboring gene zinc finger protein CONSTANS-LIKE 3 Neighboring gene F-box/LRR-repeat protein At1g06630

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables D-ribulokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328488
    Names
    FGGY carbohydrate kinase domain-containing protein
    Os02g0177900
    P0504A05.27-1
    putative ribulokinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4311413..4318996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770639.3 → XP_015626125.1  uncharacterized protein LOC4328488

      UniProtKB/TrEMBL
      Q6ETN0
      Conserved Domains (1) summary
      cd07782
      Location:10 → 569
      FGGY_YpCarbK_like; Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases

    RNA

    1. XR_010739289.1 RNA Sequence

    2. XR_010739290.1 RNA Sequence

    3. XR_010739291.1 RNA Sequence

    4. XR_010739292.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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