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    LOC4325947 branchpoint-bridging protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325947, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325947
    Gene description
    branchpoint-bridging protein
    Locus tag
    OSNPB_010715000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 14.9), roots after flowering (RPKM 9.1) and 6 other tissues See more
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    Genomic context

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    See LOC4325947 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30324712..30327898, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29736294..29739485, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor 23 Neighboring gene ras-related protein Rab7 Neighboring gene F-box/FBD/LRR-repeat protein At5g56420-like Neighboring gene FBD-associated F-box protein At5g60610-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    branchpoint-bridging protein; uncharacterized protein LOC4325947
    Names
    Os01g0715000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30324712..30327898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794207.3 → XP_015649693.1  uncharacterized protein LOC4325947 isoform X2

      Conserved Domains (1) summary
      cl21539
      Location:101 → 141
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40

    2. XM_026020491.2 → XP_025876276.1  branchpoint-bridging protein isoform X1

      UniProtKB/TrEMBL
      B8A8P0
      Conserved Domains (2) summary
      PTZ00368
      Location:275 → 390
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PRK14289
      Location:79 → 149
      PRK14289; molecular chaperone DnaJ
    Nucleotide Protein
    Heading Accession and Version

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