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    LOC4330131 thylakoid lumenal protein TL20.3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330131, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330131
    Gene description
    thylakoid lumenal protein TL20.3, chloroplastic
    Locus tag
    OSNPB_020643500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1282_H11.6
    Expression
    Broad expression in leaves before flowering (RPKM 75.2), roots after flowering (RPKM 58.2) and 5 other tissues See more
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    Genomic context

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    See LOC4330131 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26341879..26345373)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25855537..25859117)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated protein 1-2 Neighboring gene protein YABBY 4-like Neighboring gene NAC domain-containing protein 7 Neighboring gene auxin-responsive protein SAUR36 Neighboring gene plasmodesmata-located protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    thylakoid lumenal protein TL20.3, chloroplastic
    Names
    Os02g0643500
    thylakoid lumenal protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      26341879..26345373
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767441.3 → XP_015622927.1  thylakoid lumenal protein TL20.3, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A2X7Q5, A3A9I3, Q0DZ64, Q6H667
      Conserved Domains (1) summary
      COG1357
      Location:106 → 206
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]

    2. XM_015767442.3 → XP_015622928.1  thylakoid lumenal protein TL20.3, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A2X7Q5
      Conserved Domains (2) summary
      pfam00805
      Location:108 → 151
      Pentapeptide; Pentapeptide repeats (8 copies)
      pfam13599
      Location:114 → 189
      Pentapeptide_4; Pentapeptide repeats (9 copies)
    Nucleotide Protein
    Heading Accession and Version

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