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    LOC4333869 zinc finger protein VAR3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333869, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333869
    Gene description
    zinc finger protein VAR3, chloroplastic
    Locus tag
    OSNPB_030708900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333869 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29462493..29467512)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28588565..28593776)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene myosin-binding protein 3 Neighboring gene probable transcription factor At3g04930 Neighboring gene uncharacterized LOC4333870 Neighboring gene basic blue protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein VAR3, chloroplastic
    Names
    Os03g0708900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29462493..29467512
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772645.3 → XP_015628131.1  zinc finger protein VAR3, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8YCV6, B8AQC1, B9FB48, Q0DP83, Q10E42, Q53RK2
      Conserved Domains (3) summary
      smart00547
      Location:364 → 387
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:294 → 313
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:290 → 318
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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