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    LOC4341940 xyloglucan endotransglucosylase/hydrolase protein 22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341940, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341940
    Gene description
    xyloglucan endotransglucosylase/hydrolase protein 22
    Locus tag
    OSNPB_060696400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 144.8), flowers (RPKM 44.1) and 1 other tissue See more
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    Genomic context

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    See LOC4341940 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29999779..30001246)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29133006..29134600)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL43 Neighboring gene uncharacterized LOC112939291 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene xyloglucan endotransglucosylase protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase protein 22
    Names
    Os06g0696400
    P0028E05.17-1
    P0028E05.17-2
    P0622F03.43-1
    P0622F03.43-2
    putative xyloglucan endotransglycosylase
    xyloglucan endotransglycosylase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29999779..30001246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785621.3 → XP_015641107.1  xyloglucan endotransglucosylase/hydrolase protein 22

      UniProtKB/TrEMBL
      A2YGK9, A3BF01, Q0D9V4, Q5Z6H3, Q5Z8G6
      Conserved Domains (1) summary
      cd02176
      Location:20 → 290
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version

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