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    PHR2 protein PHOSPHATE STARVATION RESPONSE 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343086, updated on 16-Jul-2024

    Summary

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    Gene symbol
    PHR2
    Gene description
    protein PHOSPHATE STARVATION RESPONSE 2-like
    Locus tag
    OSNPB_070438800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPHR2; P0443H10.4
    Expression
    Ubiquitous expression in roots after flowering (RPKM 29.1), leaves before flowering (RPKM 27.9) and 6 other tissues See more
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    Genomic context

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    See PHR2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (14910608..14916230)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14753705..14759375)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT5.4 Neighboring gene uncharacterized LOC4343085 Neighboring gene uncharacterized LOC9269557 Neighboring gene KH domain-containing protein HEN4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PHOSPHATE STARVATION RESPONSE 2
    Names
    LOC_Os07g25710
    OSJNBa0026I22.19
    Os07g0438800
    phosphate starvation response regulator-like protein
    protein PHR1-LIKE 1
    putative CDPK substrate protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403057.1 → NP_001389986.1  protein PHOSPHATE STARVATION RESPONSE 2

      Status: VALIDATED

      Source sequence(s)
      AK060412, AK100065, BP184532
      UniProtKB/Swiss-Prot
      B8B5N8, B9FWZ1, Q6Z156

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      14910608..14916230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z156.1 GenPept UniProtKB/Swiss-Prot:Q6Z156

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