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    LOC4332988 uncharacterized LOC4332988 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332988, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332988
    Gene description
    uncharacterized LOC4332988
    Locus tag
    OSNPB_030383800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 55.5), leaves after flowering (RPKM 48.8) and 6 other tissues See more
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    Genomic context

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    See LOC4332988 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15565978..15570812, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15214227..15219079, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene 3-ketoacyl-CoA synthase 19 Neighboring gene heavy metal-associated isoprenylated plant protein 23 Neighboring gene uncharacterized LOC9272415

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332988
    Names
    Os03g0383800
    apoptotic chromatin condensation inducer in the nucleus

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15565978..15570812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776029.3 → XP_015631515.1  uncharacterized protein LOC4332988

      UniProtKB/TrEMBL
      B9F8R0, Q10KI0
      Conserved Domains (5) summary
      COG5271
      Location:174 → 453
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:57 → 225
      rne; ribonuclease E; Reviewed
      pfam02037
      Location:12 → 42
      SAP; SAP domain
      pfam16294
      Location:656 → 707
      RSB_motif; RNSP1-SAP18 binding (RSB) motif
      cd12432
      Location:519 → 603
      RRM_ACINU; RNA recognition motif (RRM) found in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins

    2. XM_015776027.3 → XP_015631513.1  uncharacterized protein LOC4332988

      UniProtKB/TrEMBL
      B9F8R0, Q10KI0
      Conserved Domains (5) summary
      COG5271
      Location:174 → 453
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:57 → 225
      rne; ribonuclease E; Reviewed
      pfam02037
      Location:12 → 42
      SAP; SAP domain
      pfam16294
      Location:656 → 707
      RSB_motif; RNSP1-SAP18 binding (RSB) motif
      cd12432
      Location:519 → 603
      RRM_ACINU; RNA recognition motif (RRM) found in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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