LOC4325983 multicopper oxidase LPR1 homolog 4-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4325983
Gene description: multicopper oxidase LPR1 homolog 4-like
Locus tag: OSNPB_010126900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: LPR4
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Genomic context

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (1493795..1496742)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (1486362..1489074)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables copper ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: multicopper oxidase LPR1 homolog 4

Names: LOC_Os01g03620; Multicopper oxidase LPR1 homolog 4; P0044F08.29; P0409B08.14; putative spore coat protein; putative spore coat protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001401539.1 → NP_001388468.1 multicopper oxidase LPR1 homolog 4 precursor

Status: VALIDATED

Source sequence(s)

AK109876, AP014957

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089035.1 Reference ASM3414082v1 Primary Assembly

Range

1493795..1496742

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015773918.3 → XP_015629404.1 multicopper oxidase LPR1 homolog 4 isoform X1

UniProtKB/Swiss-Prot

Q5ZE01, Q7F757

UniProtKB/TrEMBL

B8AD16

Conserved Domains (3) summary

cd13844
Location:74 → 227

CuRO_1_BOD_CotA_like; The first Cupredoxin domain of Bilirubin oxidase (BOD), the bacterial endospore coat component CotA, and similar proteins

cd13868
Location:240 → 389

CuRO_2_CotA_like; The second Cupredoxin domain of bacterial laccases including CotA, a bacterial endospore coat component

cl19115
Location:420 → 586

Cupredoxin; Cupredoxin superfamily