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    LOC4331338 very-long-chain aldehyde decarbonylase GL1-10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331338, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331338
    Gene description
    very-long-chain aldehyde decarbonylase GL1-10-like
    Locus tag
    OSNPB_030108500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 2.2), flowers (RPKM 1.9) and 1 other tissue See more
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    Genomic context

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    See LOC4331338 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (507379..509273, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (499917..501879, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 32 Neighboring gene vacuolar protein sorting-associated protein 24 homolog 1 Neighboring gene DEAD-box ATP-dependent RNA helicase 50-like Neighboring gene uncharacterized LOC4331340 Neighboring gene cyclin-dependent kinase A-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables C-4 methylsterol oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain aldehyde decarbonylase GL1-10-like
    Names
    Os03g0108500
    methylsterol monooxygenase 1-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      507379..509273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772909.3 → XP_015628395.1  very-long-chain aldehyde decarbonylase GL1-10-like isoform X2

      UniProtKB/TrEMBL
      A2XBL2, B9FAD2, Q10SX1
      Conserved Domains (1) summary
      pfam04116
      Location:129 → 264
      FA_hydroxylase; Fatty acid hydroxylase superfamily

    2. XM_026024338.2 → XP_025880123.1  very-long-chain aldehyde decarbonylase GL1-10-like isoform X1

      UniProtKB/TrEMBL
      A2XBL2
      Conserved Domains (1) summary
      pfam04116
      Location:129 → 265
      FA_hydroxylase; Fatty acid hydroxylase superfamily
    Nucleotide Protein
    Heading Accession and Version

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