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    LOC4348270 probable glucuronosyltransferase Os10g0205300 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348270, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4348270
    Gene description
    probable glucuronosyltransferase Os10g0205300
    Locus tag
    OSNPB_100205300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GT43G; OsJ_31015
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    Genomic context

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    See LOC4348270 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (7662371..7666320, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (7499504..7503500, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1-like Neighboring gene ABC transporter G family member 51-like Neighboring gene uncharacterized LOC4348272

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Lee C, et al. Plant Signal Behav, 2014. PMID 24525904, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xylosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucuronoxylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type secondary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glucuronosyltransferase Os10g0205300
    Names
    GT43 family glycosyltransferase G
    LOC_Os10g13810
    OSJNBb0048O22.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423927.1 → NP_001410856.1  probable glucuronosyltransferase Os10g0205300

      Status: VALIDATED

      Source sequence(s)
      AK107374, CF308469
      UniProtKB/Swiss-Prot
      Q8S626
      UniProtKB/TrEMBL
      A0A023ND10, A2Z5S9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      7662371..7666320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759151.3 → XP_015614637.1  probable glucuronosyltransferase Os10g0205300 isoform X1

      UniProtKB/Swiss-Prot
      Q8S626
      UniProtKB/TrEMBL
      A0A023ND10, A2Z5S9
      Conserved Domains (1) summary
      pfam03360
      Location:98 → 321
      Glyco_transf_43; Glycosyltransferase family 43
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S626.1 GenPept UniProtKB/Swiss-Prot:Q8S626

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials