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    LOC4324930 AUGMIN subunit 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324930, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324930
    Gene description
    AUGMIN subunit 7
    Locus tag
    OSNPB_010869500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0039A07.2
    Expression
    Ubiquitous expression in flowers (RPKM 12.3), flower buds (RPKM 10.3) and 6 other tissues See more
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    Genomic context

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    See LOC4324930 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38315177..38318038, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37686479..37689495, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion protein PDS5 homolog B Neighboring gene UDP-glycosyltransferase 1 Neighboring gene uncharacterized LOC4324931 Neighboring gene transfer RNA glutamine (anticodon UUG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule minus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centrosome cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HAUS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AUGMIN subunit 7
    Names
    Os01g0869500
    P0677H08.34
    putative nuclear matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38315177..38318038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772438.3 → XP_015627924.1  AUGMIN subunit 7

      UniProtKB/TrEMBL
      B9EUV8, Q5N945, Q5N9Z2
      Conserved Domains (1) summary
      pfam06694
      Location:6 → 323
      Plant_NMP1; Plant nuclear matrix protein 1 (NMP1)
    Nucleotide Protein
    Heading Accession and Version

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