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    LOC4343368 pentatricopeptide repeat-containing protein At1g05670, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343368, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343368
    Gene description
    pentatricopeptide repeat-containing protein At1g05670, mitochondrial
    Locus tag
    OSNPB_070513200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 1.8), flower buds (RPKM 1.6) and 6 other tissues See more
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    Genomic context

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    See LOC4343368 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19895434..19900370)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19668320..19673207)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit gamma, chloroplastic Neighboring gene protein RRP6-like 3 Neighboring gene uncharacterized LOC136357362 Neighboring gene protein MAIN-LIKE 1-like Neighboring gene uncharacterized LOC4343369

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g05670, mitochondrial
    Names
    OSJNBb0041J06.117
    Os07g0513200
    P0580A11.136
    putative CRP1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19895434..19900370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791361.3 → XP_015646847.1  pentatricopeptide repeat-containing protein At1g05670, mitochondrial

      UniProtKB/TrEMBL
      Q69RB4, Q84NV9
      Conserved Domains (3) summary
      PLN03218
      Location:292 → 699
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:392 → 419
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:251 → 296
      PPR_2; PPR repeat family

    2. XM_015791364.3 → XP_015646850.1  pentatricopeptide repeat-containing protein At1g05670, mitochondrial

      UniProtKB/TrEMBL
      Q69RB4, Q84NV9
      Conserved Domains (3) summary
      PLN03218
      Location:292 → 699
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:392 → 419
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:251 → 296
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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