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    LOC4333824 protein ETHYLENE-INSENSITIVE 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333824, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333824
    Gene description
    protein ETHYLENE-INSENSITIVE 2-like
    Locus tag
    OSNPB_030700800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 23.5), roots after flowering (RPKM 15.1) and 6 other tissues See more
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    Genomic context

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    See LOC4333824 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (28990362..28997987)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28116587..28124234)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355607 Neighboring gene probable linoleate 9S-lipoxygenase 4 Neighboring gene uncharacterized LOC4333825 Neighboring gene uncharacterized LOC4333826

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadmium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in metal ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ETHYLENE-INSENSITIVE 2-like
    Names
    Os03g0700800
    ethylene-insensitive protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      28990362..28997987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775950.3 → XP_015631436.1  protein ETHYLENE-INSENSITIVE 2-like isoform X1

      UniProtKB/TrEMBL
      Q0DPC8, Q10EG4, Q53RB3
      Conserved Domains (1) summary
      pfam01566
      Location:43 → 391
      Nramp; Natural resistance-associated macrophage protein

    2. XM_015775951.3 → XP_015631437.1  protein ETHYLENE-INSENSITIVE 2-like isoform X2

      UniProtKB/TrEMBL
      Q53RB3
      Conserved Domains (2) summary
      pfam01566
      Location:43 → 320
      Nramp; Natural resistance-associated macrophage protein
      cl00456
      Location:1 → 322
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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